Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015788495.1_cds_XP_016466431.1_550
CDS Infomation

[gene=LOC107789081] [db_xref=GeneID:107789081] [protein=small RNA degrading nuclease 1-like isoform X2] [protein_id=XP_016466431.1] [location=join(31226..31261,31590..31772,31865..31954,32564..32632,33050..33193,33350..33466,33575..33644,33903..34003,34359..34493,34580..34687,35725..35829,35965..36300)] [gbkey=CDS]
Sequence

ATGGATTCGAAGTTTGCCTCATCAGCGAAGAAAGAGGTTCTAGTCGAAATTGTCAAGTTA
GCTCAAAAGCGACAGACGAAAGGAAGTAGCGGAGGTTGGAAAGATTTTTTGAGATCACAC
GACAAGAAGTTAGGGGTTAGCTTGAGTGACCCGTCGAAGAGGTCCGTTGATGATCTGCTT
GCGTTTTTGAAGACGTTTAGCCAAGAGGATGACATAAAGCTTTTTAAAAAGGTGTTTCAA
TGTTATTCCAATCGAGATGCTGTAGAGAAGCTTCAGAAAAAGTCGCCGGATAGTGAATCC
GCGGAACAGGGACTGGTTCGTTTAACTTTTGAGCACCCTCAATACCCGACAGATTACTCA
TTTCCATCACACGAGGAGGACTGGTTAGTCACGAGAAGGACTAAAAAGTCTAATTTCGTA
AAATCAAAAAAGGCAATGATTGCAATTGATTGCGAAATGGTTCTTTGCCAAGATGGAACC
GAAGCTTTAGTCAGAATCTGTGCTGTGGATGATAAGTTGGAGGTTAAACTCAATGAATTT
GTGAATCCAAACAAACCAATTGCAGATTACAGAACTGAGATTACTGGAATAACCGCTGGA
GATTTAGATGGAGTTTCTTGTTCATTGGCTGATGTACAGATGTCCATGAAGAAGCTATTA
TCACATGGAACCATATTGATTGGCCACAGTTTACACAATGACCTTCGTGCTTTGAAGATA
GATCATGCAAGAGTGATTGACACATCTTATGTCTTCAAATATCGGGATCAGCCTTCTAAT
AGAAGACCTTCTTTAAGTAATTTGTGTAAGTCTGTGTTAGGTTTTGAACTTCGAAAGAAG
GACTCTCCACATAATTGTCTGGATGATGCATGTACTGCAATGAAACTTGTTCTTGCCAAG
ATTGAACGTGGAGTTGATTGTATCATACCGTTAGTTCGTGAGGAGGTGCAAGAGCCCAAG
GTGGCAAAGCTACTTGTCCACAGAATACCAGTGGCTGTTCATAGCGAAGAGTTACACAAA
GTTATTCCTGGAGACTTTACCTTAGAAGTTAAGGCTAATAAAAAAGGGCAAGCAGACAAG
TATTCTGCCTTCGTCAATTTCAAAAATCAGCAAGAGGCAAATGAGGCATTTGAAAAGCTT
GAAGGCAACCAAGATAAGGATTCTGTGGGACGGCCACAAAAGCTCGTTTCATTTCATCTT
GATTCCGGTATATCAGGGGTTTTGTGTGTTTGTAAGATGGCCACCAATAACTTAGATATA
GAGGTTAACCCAATGAAGAGGTCATCTGTAGATGAAGAGACCGTGAGAGAGCCAAAGAAA
CCGAGAATAGAAGACCAATGTACGGAGCTCAAGGAGGCTGGTGCAGGTTGTAGTCAGTGT
GAAACTCACGTGACGGAGATTGAGAGGCTAAAGAAAGAATTAAACCACAGAGATGATGAA
ATCTCCAACTTGAACAAACTCATTGTTAACCTTGTGAGAAAACAAGGATTGTAA

Peptide Sequence

PEP ID

XP_016466431.1
PEP Infomation

PREDICTED: small RNA degrading nuclease 1-like isoform X2 [Nicotiana tabacum]
Sequence

MDSKFASSAKKEVLVEIVKLAQKRQTKGSSGGWKDFLRSHDKKLGVSLSDPSKRSVDDLL
AFLKTFSQEDDIKLFKKVFQCYSNRDAVEKLQKKSPDSESAEQGLVRLTFEHPQYPTDYS
FPSHEEDWLVTRRTKKSNFVKSKKAMIAIDCEMVLCQDGTEALVRICAVDDKLEVKLNEF
VNPNKPIADYRTEITGITAGDLDGVSCSLADVQMSMKKLLSHGTILIGHSLHNDLRALKI
DHARVIDTSYVFKYRDQPSNRRPSLSNLCKSVLGFELRKKDSPHNCLDDACTAMKLVLAK
IERGVDCIIPLVREEVQEPKVAKLLVHRIPVAVHSEELHKVIPGDFTLEVKANKKGQADK
YSAFVNFKNQQEANEAFEKLEGNQDKDSVGRPQKLVSFHLDSGISGVLCVCKMATNNLDI
EVNPMKRSSVDEETVREPKKPRIEDQCTELKEAGAGCSQCETHVTEIERLKKELNHRDDE
ISNLNKLIVNLVRKQGL

Transcript Sequence

Gene sequence data has not been registered.